R packages I have co-developed with the Evolutionary Ecology Group at the University of Cambridge.
resrepo
Easy reproducible research on git
The aim of resrepo is to encourage and facilitate good practices when setting up and managing git repositories for scientific research projects. It also provides a template for a tidy repository structure that can be used for any project, with functions that help keep a clear separation of code, data and results. It also provides functionality to help manage large data that cannot be tracked on a git repository.
tidygenclust
Clustering for population genetics in R
tidygenclust provides functions and methods to run genetic clustering in R, using the commonly used ADMIXTURE program as well as the python package fastmixture. It also helps to align and compare multiple runs of the same or different K using the functionalities of the python package clumppling.